To help you figure things out, there is a Scoop Admin Guide which can hopefully answer most of your questions.
Some tips:
Most of the layout is changed in "Blocks", found in the admin tools menu
Features can be turned on and off, and configured, in "Site Controls" in the admin tools menu
Stories have an "edit" link right beside the "Full Story" link on an index page, and right beside the "Post a Comment" link on the full story page. They can also be edited by clicking the story title in the "Story List" admin tool
Boxes are what allow you to write new features for Scoop; they require a knowledge of the perl programming language to work with effectively, although you can often make small changes without knowing much perl. If you would like a feature added but cannot program it yourself, ScoopHost does custom Scoop programming as one of its services.
If you aren't sure where to look for a particular feature or piece of display, try the "Search Admin Tools" link in the admin tools menu.
As House Bill 4714 (2013) was rapidly transitioning from "read a second time" to "substitute H-3 adopted and amended" to "placed on third reading" to "read a third time" to "placed on immediate passage" to "passed; given immediate effect" . . . yes, transitioning just that quickly (the proof starts on page 24 of House Journal # 59) . . . I was in conversation with, among others, Dara Bailey (Vice President & National Vetting Director of iCaucus National). She offered to commit national resources to help the liberty-minded network in Michigan do what needs to be done to visit political punishment on every single legislative turncoat next summer. All that we need to do as a statewide movement is to use Joanie's screencap of 2013 House Roll Call # 241 as a motivator to set aside our nationally infamous internecine squabbling, and work as a cohesive machine toward a larger goal.
It's by now quite obvious that there are wayyy too many people occupying either publicly-elected office or party-elected internal office that still don't understand a key concept of the liberty movement, grassroots conservatives, and tea party network (committed to principled cause first, and loyal to a political party only to the extent that the party serves the purpose of the cause). The arm-twisting associated with the passage in the House of 2013 House Bill 4111 (which still sits "on the table" in the Senate, according to Thursday's calendar), and the heavy-handed bifarceisanship and lobbyist nonsense that we're seeing leveraged in an attempt to accomplish the passage of 2013 House Bill 4714, (which, as of Thursday's House calendar, has been reported to the House floor for a second reading) seems to indicate that some politician paper training is still in order.